Using pip

To install dRep, simply run

$ pip install drep


$ git clone

$ cd drep

$ pip install .

That’s it!


dRep requires many other great programs to run. Not all dependencies are needed for all operations

Programs need to be installed to the system path, so that you can call them from anywhere on your computer.


To make sure everything is installed correctly you can run the dRep test suite:

$ cd drep/tests

$ python


Because dRep is written in python3 and CheckM is written in python2, you may need to use pyenv to be able to call both.

With CheckM installed in a python2 installation of pyenv, and dRep installed in the python3 version, the following command should set allow both python2 and python3 commands to be called:

$ pyenv global 3.5.1 2.7.9

Alternatively, you could add python2 to your CheckM shebang line (though I have not confirmed that this works)